10.4225/55/5a76e47b2040a Nathan Watson-Haigh Nathan Watson-Haigh Radoslaw Suchecki Radoslaw Suchecki Melissa de Oliveira Santos Garcia Melissa de Oliveira Santos Garcia Elena Kalashyan Elena Kalashyan Ute Baumann Ute Baumann Alsen WGS vs IWGSC RefSeq v1.0 Genome Assembly The University of Adelaide 2018 BAM VCF bigWig wheat Alsen IWGSC Bioinformatics Software Bioinformatics Genomics 2018-07-10 12:54:53 Dataset https://adelaide.figshare.com/articles/dataset/Alsen_WGS_vs_IWGSC_RefSeq_v1_0_Genome_Assembly/5848350 WGS reads of Alsen (http://dx.doi.org/10.1111/j.1467-7652.2012.00717.x) were aligned against the IWGSC <i>Triticum aestivum</i> Chinese Spring RefSeq v1.0 genome assembly using Minimap2. These BAM files (.bam) and index files (.bam.bai) are provided together with a summary of read alignment coverage bigWig files (.bam.bw). SNP variants were called from these BAM files to generate VCF files (.bam.vcf.gz) and index files (.bam.vcf.gz.tbi) and are provided together with a summary of SNP density (SNPs per 10 kbp) bigWig files (.bam.vcf.w10000_s10000.bw). VCF files contain the following filter values and corresponding meaning: PASS = high quality (Q>=30) homozygous; Het = high quality (Q>=30) heterozygous; LowQualHom = low quality (Q<30) homozygous; LowQualHet = low quality (Q<30) heterozygous. Files are provided separately for each chromosome part.