%0 Generic %A Watson-Haigh, Nathan %A Suchecki, Radoslaw %A de Oliveira Santos Garcia, Melissa %A Kalashyan, Elena %A Baumann, Ute %D 2018 %T Westonia WGS vs IWGSC RefSeq v1.0 Genome Assembly %U https://adelaide.figshare.com/articles/dataset/Westonia_WGS_vs_IWGSC_RefSeq_v1_0_Genome_Assembly/5848383 %R 10.4225/55/5a76e2b1ac93b %2 https://adelaide.figshare.com/ndownloader/files/12292133 %2 https://adelaide.figshare.com/ndownloader/files/12292061 %2 https://adelaide.figshare.com/ndownloader/files/12292058 %2 https://adelaide.figshare.com/ndownloader/files/12292055 %2 https://adelaide.figshare.com/ndownloader/files/12292052 %2 https://adelaide.figshare.com/ndownloader/files/12292049 %2 https://adelaide.figshare.com/ndownloader/files/12292046 %2 https://adelaide.figshare.com/ndownloader/files/12292043 %2 https://adelaide.figshare.com/ndownloader/files/12292040 %2 https://adelaide.figshare.com/ndownloader/files/12292037 %2 https://adelaide.figshare.com/ndownloader/files/12292034 %2 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https://adelaide.figshare.com/ndownloader/files/12291797 %2 https://adelaide.figshare.com/ndownloader/files/12291794 %2 https://adelaide.figshare.com/ndownloader/files/12291815 %2 https://adelaide.figshare.com/ndownloader/files/12291782 %2 https://adelaide.figshare.com/ndownloader/files/12291785 %2 https://adelaide.figshare.com/ndownloader/files/12291788 %2 https://adelaide.figshare.com/ndownloader/files/12291791 %2 https://adelaide.figshare.com/ndownloader/files/10379856 %2 https://adelaide.figshare.com/ndownloader/files/10379811 %2 https://adelaide.figshare.com/ndownloader/files/10385055 %2 https://adelaide.figshare.com/ndownloader/files/10380198 %2 https://adelaide.figshare.com/ndownloader/files/10379658 %2 https://adelaide.figshare.com/ndownloader/files/10379622 %K BAM %K VCF %K bigWig %K wheat %K Westonia %K IWGSC %K Bioinformatics Software %K Bioinformatics %K Genomics %X WGS reads of Westonia (http://dx.doi.org/10.1111/j.1467-7652.2012.00717.x) were aligned against the IWGSC Triticum aestivum Chinese Spring RefSeq v1.0 genome assembly using Minimap2. These BAM files (.bam) and index files (.bam.bai) are provided together with a summary of read alignment coverage bigWig files (.bam.bw). SNP variants were called from these BAM files to generate VCF files (.bam.vcf.gz) and index files (.bam.vcf.gz.tbi) and are provided together with a summary of SNP density (SNPs per 10 kbp) bigWig files (.bam.vcf.w10000_s10000.bw). VCF files contain the following filter values and corresponding meaning: PASS = high quality (Q>=30) homozygous; Het = high quality (Q>=30) heterozygous; LowQualHom = low quality (Q<30) homozygous; LowQualHet = low quality (Q<30) heterozygous. Files are provided separately for each chromosome part. %I The University of Adelaide