.TBI

AC-Barrie_chr6B_part2.bam.vcf.gz.tbi (148.99 kB)

.TBI

AC-Barrie_chr5A_part2.bam.vcf.gz.tbi (141.44 kB)

.BW

AC-Barrie_chr3D_part1.bam.vcf.w10000_s10000.bw (5.88 MB)

.TBI

AC-Barrie_chr3D_part1.bam.vcf.gz.tbi (255.88 kB)

.BW

AC-Barrie_chr6A_part2.bam.bw (34.86 MB)

.GZ

AC-Barrie_chr5A_part2.bam.vcf.gz (13.92 MB)

.BAI

AC-Barrie_chr6A_part2.bam.bai (430.6 kB)

.GZ

AC-Barrie_chr3D_part1.bam.vcf.gz (12.9 MB)

.BW

AC-Barrie_chr4D_part1.bam.bw (104.2 MB)

.BW

AC-Barrie_chr2D_part1.bam.vcf.w10000_s10000.bw (5.88 MB)

.BAI

AC-Barrie_chr4D_part1.bam.bai (1.17 MB)

.BW

AC-Barrie_chr4A_part1.bam.vcf.w10000_s10000.bw (5.88 MB)

.TBI

AC-Barrie_chr2D_part1.bam.vcf.gz.tbi (248.99 kB)

.TBI

AC-Barrie_chr4A_part1.bam.vcf.gz.tbi (249.34 kB)

.BAM

AC-Barrie_chrUn.bam (1 GB)

.BW

AC-Barrie_chr5A_part2.bam.vcf.w10000_s10000.bw (5.84 MB)

.GZ

AC-Barrie_chr6A_part2.bam.vcf.gz (9.03 MB)

.TBI

AC-Barrie_chr6A_part2.bam.vcf.gz.tbi (91 kB)

.GZ

AC-Barrie_chr6B_part2.bam.vcf.gz (23.02 MB)

.BW

AC-Barrie_chr5A_part1.bam.bw (100.48 MB)

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264 files

AC-Barrie WGS vs IWGSC RefSeq v1.0 Genome Assembly

Version 2 2018-07-10, 12:55

Version 1 2018-02-04, 11:53

dataset

posted on 2018-07-10, 12:55 authored by Nathan Watson-Haigh, Radoslaw Suchecki, Melissa de Oliveira Santos Garcia, Elena Kalashyan, Ute Baumann

WGS reads of AC-Barrie (http://dx.doi.org/10.1111/j.1467-7652.2012.00717.x) were aligned against the IWGSC Triticum aestivum Chinese Spring RefSeq v1.0 genome assembly using Minimap2. These BAM files (.bam) and index files (.bam.bai) are provided together with a summary of read alignment coverage bigWig files (.bam.bw). SNP variants were called from these BAM files to generate VCF files (.bam.vcf.gz) and index files (.bam.vcf.gz.tbi) and are provided together with a summary of SNP density (SNPs per 10 kbp) bigWig files (.bam.vcf.w10000_s10000.bw). VCF files contain the following filter values and corresponding meaning: PASS = high quality (Q>=30) homozygous; Het = high quality (Q>=30) heterozygous; LowQualHom = low quality (Q<30) homozygous; LowQualHet = low quality (Q<30) heterozygous. Files are provided separately for each chromosome part.