.BAI
Alsen_chr5B_part1.bam.bai (1.23 MB)
.TBI
Alsen_chr4A_part1.bam.vcf.gz.tbi (249.38 kB)
.GZ
Alsen_chr4A_part1.bam.vcf.gz (22.45 MB)
.BW
Alsen_chr3D_part1.bam.bw (190.74 MB)
.BAI
Alsen_chr3D_part1.bam.bai (1.33 MB)
.BW
Alsen_chr4A_part1.bam.bw (174.39 MB)
.BAI
Alsen_chr4A_part1.bam.bai (1.25 MB)
.BW
Alsen_chr5B_part2.bam.vcf.w10000_s10000.bw (5.84 MB)
.TBI
Alsen_chr5B_part2.bam.vcf.gz.tbi (145.52 kB)
.BAM
Alsen_chrUn.bam (1.04 GB)
.BW
Alsen_chr5A_part2.bam.vcf.w10000_s10000.bw (5.84 MB)
.TBI
Alsen_chr5A_part2.bam.vcf.gz.tbi (140.52 kB)
.GZ
Alsen_chr5B_part2.bam.vcf.gz (23.58 MB)
.BW
Alsen_chr6A_part2.bam.vcf.w10000_s10000.bw (5.82 MB)
.TBI
Alsen_chr6A_part2.bam.vcf.gz.tbi (91.29 kB)
.BAI
Alsen_chr4B_part1.bam.bai (1.23 MB)
.BW
Alsen_chr4A_part1.bam.vcf.w10000_s10000.bw (5.88 MB)
.BW
Alsen_chr4B_part1.bam.bw (173.24 MB)
.BAI
Alsen_chr5A_part1.bam.bai (1.26 MB)
.BW
Alsen_chr4D_part1.bam.bw (184.66 MB)
1/0
Alsen WGS vs IWGSC RefSeq v1.0 Genome Assembly
Version 2 2018-07-10, 12:54
Version 1 2018-02-04, 10:53
dataset
posted on 2018-07-10, 12:54 authored by Nathan Watson-Haigh, Radoslaw Suchecki, Melissa de Oliveira Santos Garcia, Elena Kalashyan, Ute BaumannWGS reads of Alsen (http://dx.doi.org/10.1111/j.1467-7652.2012.00717.x) were aligned against the IWGSC Triticum aestivum Chinese Spring RefSeq v1.0 genome assembly using Minimap2. These BAM files (.bam) and index files (.bam.bai) are provided together with a summary of read alignment coverage bigWig files (.bam.bw). SNP variants were called from these BAM files to generate VCF files (.bam.vcf.gz) and index files (.bam.vcf.gz.tbi) and are provided together with a summary of SNP density (SNPs per 10 kbp) bigWig files (.bam.vcf.w10000_s10000.bw). VCF files contain the following filter values and corresponding meaning: PASS = high quality (Q>=30) homozygous; Het = high quality (Q>=30) heterozygous; LowQualHom = low quality (Q<30) homozygous; LowQualHet = low quality (Q<30) heterozygous. Files are provided separately for each chromosome part.
