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.GZ
Chara,AUS_chr7A_part2.bam.vcf.gz (25.7 MB)
.BW
Chara,AUS_chr6B_part1.bam.bw (191.17 MB)
.BAI
Chara,AUS_chrUn.bam.bai (1.06 MB)
.BAI
Chara,AUS_chr6B_part1.bam.bai (1.2 MB)
.BW
Chara,AUS_chr5D_part1.bam.bw (214.62 MB)
.BAI
Chara,AUS_chr5D_part1.bam.bai (1.25 MB)
.BW
Chara,AUS_chr5B_part1.bam.bw (207.16 MB)
.BW
Chara,AUS_chr7D_part2.bam.vcf.w10000_s10000.bw (5.82 MB)
.BAI
Chara,AUS_chr5B_part1.bam.bai (1.23 MB)
.TBI
Chara,AUS_chr7D_part2.bam.vcf.gz.tbi (102.05 kB)
.GZ
Chara,AUS_chr7D_part2.bam.vcf.gz (9.94 MB)
.BW
Chara,AUS_chr4B_part1.bam.vcf.w10000_s10000.bw (5.88 MB)
.BW
Chara,AUS_chr7D_part2.bam.bw (87.98 MB)
.TBI
Chara,AUS_chr4B_part1.bam.vcf.gz.tbi (246.94 kB)
.BW
Chara,AUS_chr5A_part1.bam.vcf.w10000_s10000.bw (5.89 MB)
.BAI
Chara,AUS_chr7D_part2.bam.bai (522.41 kB)
.BW
Chara,AUS_chrUn.bam.bw (82.19 MB)
.GZ
Chara,AUS_chr5B_part1.bam.vcf.gz (50.59 MB)
.GZ
Chara,AUS_chrUn.bam.vcf.gz (15.31 MB)
.TBI
Chara,AUS_chr6B_part1.bam.vcf.gz.tbi (251.64 kB)
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261 files

Chara,AUS WGS vs IWGSC RefSeq v1.0 Genome Assembly

Version 2 2018-07-10, 12:54
Version 1 2018-02-04, 11:52
dataset
posted on 2018-07-10, 12:54 authored by Nathan Watson-Haigh, Radoslaw Suchecki, Melissa de Oliveira Santos Garcia, Elena Kalashyan, Ute Baumann
WGS reads of Chara,AUS (http://dx.doi.org/10.1111/j.1467-7652.2012.00717.x) were aligned against the IWGSC Triticum aestivum Chinese Spring RefSeq v1.0 genome assembly using Minimap2. These BAM files (.bam) and index files (.bam.bai) are provided together with a summary of read alignment coverage bigWig files (.bam.bw). SNP variants were called from these BAM files to generate VCF files (.bam.vcf.gz) and index files (.bam.vcf.gz.tbi) and are provided together with a summary of SNP density (SNPs per 10 kbp) bigWig files (.bam.vcf.w10000_s10000.bw). VCF files contain the following filter values and corresponding meaning: PASS = high quality (Q>=30) homozygous; Het = high quality (Q>=30) heterozygous; LowQualHom = low quality (Q<30) homozygous; LowQualHet = low quality (Q<30) heterozygous. Files are provided separately for each chromosome part.

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