.GZ

Chinese Spring_chr7B_part1.bam.vcf.gz (1.04 MB)

.BW

Chinese Spring_chr7D_part1.bam.vcf.w10000_s10000.bw (5.81 MB)

.BW

Chinese Spring_chr6D_part1.bam.vcf.w10000_s10000.bw (5.81 MB)

.TBI

Chinese Spring_chr3A_part1.bam.vcf.gz.tbi (54.75 kB)

.BW

Chinese Spring_chr6B_part1.bam.vcf.w10000_s10000.bw (5.81 MB)

.TBI

Chinese Spring_chr7D_part1.bam.vcf.gz.tbi (59.77 kB)

.TBI

Chinese Spring_chr6D_part1.bam.vcf.gz.tbi (57.98 kB)

.BW

Chinese Spring_chr5D_part1.bam.vcf.w10000_s10000.bw (5.81 MB)

.GZ

Chinese Spring_chr3A_part1.bam.vcf.gz (1014.92 kB)

.TBI

Chinese Spring_chr6B_part1.bam.vcf.gz.tbi (61.49 kB)

.GZ

Chinese Spring_chr7D_part1.bam.vcf.gz (1.32 MB)

.GZ

Chinese Spring_chr6D_part1.bam.vcf.gz (1.22 MB)

.TBI

Chinese Spring_chr5D_part1.bam.vcf.gz.tbi (59.89 kB)

.GZ

Chinese Spring_chr6B_part1.bam.vcf.gz (1.31 MB)

.GZ

Chinese Spring_chr5D_part1.bam.vcf.gz (1.31 MB)

.BW

Chinese Spring_chr3A_part1.bam.vcf.w10000_s10000.bw (5.81 MB)

.GZ

Chinese Spring_chr5A_part1.bam.vcf.gz (952.32 kB)

.GZ

Chinese Spring_chr7A_part1.bam.vcf.gz (1.18 MB)

.TBI

Chinese Spring_chr5B_part1.bam.vcf.gz.tbi (58.87 kB)

.BW

Chinese Spring_chr4B_part1.bam.vcf.w10000_s10000.bw (5.81 MB)

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258 files

Chinese Spring WGS vs IWGSC RefSeq v1.0 Genome Assembly

dataset

posted on 2018-07-10, 12:51 authored by Nathan Watson-Haigh, Nathan Watson-Haigh, Radoslaw Suchecki, Melissa de Oliveira Santos Garcia, Elena Kalashyan, Ute Baumann

WGS reads of Chinese Spring (ENA: PRJNA392179) were aligned against the IWGSC Triticum aestivum Chinese Spring RefSeq v1.0 genome assembly using Minimap2. These BAM files (.bam) and index files (.bam.bai) are provided together with a summary of read alignment coverage bigWig files (.bam.bw). SNP variants were called from these BAM files to generate VCF files (.bam.vcf.gz) and index files (.bam.vcf.gz.tbi) and are provided together with a summary of SNP density (SNPs per 10 kbp) bigWig files (.bam.vcf.w10000_s10000.bw). VCF files contain the following filter values and corresponding meaning: PASS = high quality (Q>=30) homozygous; Het = high quality (Q>=30) heterozygous; LowQualHom = low quality (Q<30) homozygous; LowQualHet = low quality (Q<30) heterozygous. Files are provided separately for each chromosome part.