.BW

Drysdale_chr4B_part1.bam.bw (246.57 MB)

.BW

Drysdale_chr6A_part2.bam.vcf.w10000_s10000.bw (5.81 MB)

.BAI

Drysdale_chr5B_part2.bam.bai (694.52 kB)

.TBI

Drysdale_chr6A_part2.bam.vcf.gz.tbi (90.57 kB)

.BW

Drysdale_chr3D_part1.bam.bw (243.59 MB)

.BAM

Drysdale_chr7D_part2.bam (1.23 GB)

.BAI

Drysdale_chr3D_part1.bam.bai (1.33 MB)

.GZ

Drysdale_chr6A_part2.bam.vcf.gz (8.88 MB)

.BW

Drysdale_chr5A_part2.bam.bw (119.44 MB)

.BAM

Drysdale_chr7D_part1.bam (3.01 GB)

.BAI

Drysdale_chr5A_part2.bam.bai (718.23 kB)

.BW

Drysdale_chr3A_part1.bam.vcf.w10000_s10000.bw (5.87 MB)

.TBI

Drysdale_chr3A_part1.bam.vcf.gz.tbi (242.84 kB)

.GZ

Drysdale_chr3A_part1.bam.vcf.gz (14.38 MB)

.BAM

Drysdale_chr7B_part1.bam (3.08 GB)

.BAM

Drysdale_chr7B_part2.bam (1.75 GB)

.BW

Drysdale_chr4A_part2.bam.vcf.w10000_s10000.bw (5.85 MB)

.BW

Drysdale_chr5B_part2.bam.bw (102.95 MB)

.BAM

Drysdale_chrUn.bam (1.31 GB)

.GZ

Drysdale_chr5A_part2.bam.vcf.gz (15.92 MB)

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262 files

Drysdale WGS vs IWGSC RefSeq v1.0 Genome Assembly

Version 2 2018-07-10, 12:54

Version 1 2018-02-04, 11:52

dataset

posted on 2018-07-10, 12:54 authored by Nathan Watson-Haigh, Radoslaw Suchecki, Melissa de Oliveira Santos Garcia, Elena Kalashyan, Ute Baumann

WGS reads of Drysdale (http://dx.doi.org/10.1111/j.1467-7652.2012.00717.x) were aligned against the IWGSC Triticum aestivum Chinese Spring RefSeq v1.0 genome assembly using Minimap2. These BAM files (.bam) and index files (.bam.bai) are provided together with a summary of read alignment coverage bigWig files (.bam.bw). SNP variants were called from these BAM files to generate VCF files (.bam.vcf.gz) and index files (.bam.vcf.gz.tbi) and are provided together with a summary of SNP density (SNPs per 10 kbp) bigWig files (.bam.vcf.w10000_s10000.bw). VCF files contain the following filter values and corresponding meaning: PASS = high quality (Q>=30) homozygous; Het = high quality (Q>=30) heterozygous; LowQualHom = low quality (Q<30) homozygous; LowQualHet = low quality (Q<30) heterozygous. Files are provided separately for each chromosome part.