.BW

Excalibur_chr6B_part2.bam.bw (109.44 MB)

.BW

Excalibur_chr3D_part1.bam.bw (233.75 MB)

.BW

Excalibur_chr5A_part2.bam.vcf.w10000_s10000.bw (5.84 MB)

.BAI

Excalibur_chr3D_part1.bam.bai (1.31 MB)

.TBI

Excalibur_chr5A_part2.bam.vcf.gz.tbi (144.35 kB)

.GZ

Excalibur_chr5B_part2.bam.vcf.gz (25.02 MB)

.GZ

Excalibur_chr5A_part2.bam.vcf.gz (19.06 MB)

.BAM

Excalibur_chr7D_part2.bam (1.26 GB)

.BW

Excalibur_chr5B_part2.bam.bw (106.66 MB)

.BAI

Excalibur_chr5B_part2.bam.bai (704.43 kB)

.BW

Excalibur_chr5A_part2.bam.bw (113.66 MB)

.BW

Excalibur_chr3A_part1.bam.vcf.w10000_s10000.bw (5.88 MB)

.BAI

Excalibur_chr5A_part2.bam.bai (709.51 kB)

.TBI

Excalibur_chr3A_part1.bam.vcf.gz.tbi (247.79 kB)

.BAM

Excalibur_chr7D_part1.bam (3.19 GB)

.GZ

Excalibur_chr3A_part1.bam.vcf.gz (18.91 MB)

.BAM

Excalibur_chr7B_part2.bam (1.77 GB)

.TBI

Excalibur_chr5B_part2.bam.vcf.gz.tbi (146.25 kB)

.BW

Excalibur_chr5B_part2.bam.vcf.w10000_s10000.bw (5.84 MB)

.BAM

Excalibur_chrUn.bam (1.31 GB)

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261 files

Excalibur WGS vs IWGSC RefSeq v1.0 Genome Assembly

Version 2 2018-07-10, 12:54

Version 1 2018-02-04, 10:55

dataset

posted on 2018-07-10, 12:54 authored by Nathan Watson-Haigh, Radoslaw Suchecki, Melissa de Oliveira Santos Garcia, Elena Kalashyan, Ute Baumann

WGS reads of Excalibur (http://dx.doi.org/10.1111/j.1467-7652.2012.00717.x) were aligned against the IWGSC Triticum aestivum Chinese Spring RefSeq v1.0 genome assembly using Minimap2. These BAM files (.bam) and index files (.bam.bai) are provided together with a summary of read alignment coverage bigWig files (.bam.bw). SNP variants were called from these BAM files to generate VCF files (.bam.vcf.gz) and index files (.bam.vcf.gz.tbi) and are provided together with a summary of SNP density (SNPs per 10 kbp) bigWig files (.bam.vcf.w10000_s10000.bw). VCF files contain the following filter values and corresponding meaning: PASS = high quality (Q>=30) homozygous; Het = high quality (Q>=30) heterozygous; LowQualHom = low quality (Q<30) homozygous; LowQualHet = low quality (Q<30) heterozygous. Files are provided separately for each chromosome part.