.BW

H-45_chrUn.bam.bw (76.86 MB)

.TBI

H-45_chr6A_part2.bam.vcf.gz.tbi (91.4 kB)

.GZ

H-45_chr6A_part2.bam.vcf.gz (9.3 MB)

.BW

H-45_chr3D_part1.bam.bw (214.16 MB)

.BW

H-45_chr6A_part2.bam.bw (70.62 MB)

.BAI

H-45_chr3D_part1.bam.bai (1.32 MB)

.BAI

H-45_chr6A_part2.bam.bai (464.51 kB)

.BW

H-45_chr5A_part2.bam.vcf.w10000_s10000.bw (5.84 MB)

.TBI

H-45_chr5A_part2.bam.vcf.gz.tbi (143.3 kB)

.GZ

H-45_chr5A_part2.bam.vcf.gz (19.02 MB)

.BAM

H-45_chrUn.bam (1.27 GB)

.BW

H-45_chr5B_part2.bam.vcf.w10000_s10000.bw (5.84 MB)

.BAM

H-45_chr7D_part2.bam (1.19 GB)

.TBI

H-45_chr5B_part2.bam.vcf.gz.tbi (140.25 kB)

.BW

H-45_chr3A_part1.bam.vcf.w10000_s10000.bw (5.88 MB)

.GZ

H-45_chr5B_part2.bam.vcf.gz (24.67 MB)

.TBI

H-45_chr3A_part1.bam.vcf.gz.tbi (246.25 kB)

.BW

H-45_chr6A_part2.bam.vcf.w10000_s10000.bw (5.82 MB)

.GZ

H-45_chr3D_part1.bam.vcf.gz (12.07 MB)

.TBI

H-45_chr3D_part1.bam.vcf.gz.tbi (255.67 kB)

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261 files

H-45 WGS vs IWGSC RefSeq v1.0 Genome Assembly

Version 2 2018-07-10, 12:53

Version 1 2018-02-04, 10:55

dataset

posted on 2018-07-10, 12:53 authored by Nathan Watson-Haigh, Radoslaw Suchecki, Melissa de Oliveira Santos Garcia, Elena Kalashyan, Ute Baumann

WGS reads of H-45 (http://dx.doi.org/10.1111/j.1467-7652.2012.00717.x) were aligned against the IWGSC Triticum aestivum Chinese Spring RefSeq v1.0 genome assembly using Minimap2. These BAM files (.bam) and index files (.bam.bai) are provided together with a summary of read alignment coverage bigWig files (.bam.bw). SNP variants were called from these BAM files to generate VCF files (.bam.vcf.gz) and index files (.bam.vcf.gz.tbi) and are provided together with a summary of SNP density (SNPs per 10 kbp) bigWig files (.bam.vcf.w10000_s10000.bw). VCF files contain the following filter values and corresponding meaning: PASS = high quality (Q>=30) homozygous; Het = high quality (Q>=30) heterozygous; LowQualHom = low quality (Q<30) homozygous; LowQualHet = low quality (Q<30) heterozygous. Files are provided separately for each chromosome part.