HaploMaker paper Files

dataset

posted on 2022-02-16, 14:31 authored by Mario FruzangoharMario Fruzangohar

All vcf files required to run the commands:

commonmerge.vcf

NA12878_sorted.vcf

NA12878_sorted_noheader.vcf

NA12877_noheader.vcf

HaploMaker Outputs:

NA12877_10X_haplomaker.hap

NA12877_25X_haplomaker.hap

NA12878_hifi_haplomaker.hap

NA12878_haplomaker_pacbio.hap

HapCompass Outputs:

NA12877_10X_hapcompass_q5.txt

NA12877_25X_hapcompass_q3.txt

WhatsHap outputs:

NA12877_10X_whatshap_phased_q5.vcf

NA12877_25X_whatshap_phased.vcf

NA12878_hifi_whatshap.vcf

NA12878_whatshap_pacbio.vcf

Hapcut2 outputs:

NA12877_10X_hapcut2_q5.hap

NA12877_25X_hapcut2.hap

NA12878_hifi_hapcut2_pruned.hap

NA12878_hapcut2_pruned_pacbio.hap

History