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HaploMaker paper Files

dataset
posted on 16.02.2022, 14:31 by Mario FruzangoharMario Fruzangohar
All vcf files required to run the commands:
commonmerge.vcf
NA12878_sorted.vcf
NA12878_sorted_noheader.vcf
NA12877_noheader.vcf

HaploMaker Outputs:
NA12877_10X_haplomaker.hap
NA12877_25X_haplomaker.hap
NA12878_hifi_haplomaker.hap
NA12878_haplomaker_pacbio.hap

HapCompass Outputs:
NA12877_10X_hapcompass_q5.txt
NA12877_25X_hapcompass_q3.txt

WhatsHap outputs:
NA12877_10X_whatshap_phased_q5.vcf
NA12877_25X_whatshap_phased.vcf
NA12878_hifi_whatshap.vcf
NA12878_whatshap_pacbio.vcf

Hapcut2 outputs:
NA12877_10X_hapcut2_q5.hap
NA12877_25X_hapcut2.hap
NA12878_hifi_hapcut2_pruned.hap
NA12878_hapcut2_pruned_pacbio.hap





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