.BW
Kukri_chr3A_part2.bam.bw (78.57 MB)
.BW
Kukri_chr3D_part2.bam.vcf.w10000_s10000.bw (5.81 MB)
.BW
Kukri_chr2B_part2.bam.bw (87.24 MB)
.TBI
Kukri_chr3D_part2.bam.vcf.gz.tbi (75.09 kB)
.BAM
Kukri_chr5D_part1.bam (3.02 GB)
.BAI
Kukri_chr2B_part2.bam.bai (886.2 kB)
.BW
Kukri_chr2A_part2.bam.vcf.w10000_s10000.bw (5.86 MB)
.GZ
Kukri_chr3D_part2.bam.vcf.gz (5.99 MB)
.TBI
Kukri_chr2A_part2.bam.vcf.gz.tbi (177.36 kB)
.BAM
Kukri_chr6D_part2.bam (126.95 MB)
.GZ
Kukri_chr2A_part2.bam.vcf.gz (23.76 MB)
.BW
Kukri_chr1B_part1.bam.vcf.w10000_s10000.bw (5.88 MB)
.BW
Kukri_chr3D_part2.bam.bw (39.36 MB)
.TBI
Kukri_chr1B_part1.bam.vcf.gz.tbi (240.23 kB)
.BAI
Kukri_chr3D_part2.bam.bai (366.16 kB)
.GZ
Kukri_chr1B_part1.bam.vcf.gz (34.69 MB)
.BAM
Kukri_chr5A_part1.bam (2.91 GB)
.BAM
Kukri_chr7A_part2.bam (1.83 GB)
.BAI
Kukri_chr4D_part2.bam.bai (156.98 kB)
.BW
Kukri_chr4D_part2.bam.bw (17.4 MB)
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Kukri WGS vs IWGSC RefSeq v1.0 Genome Assembly
Version 2 2018-07-10, 12:53
Version 1 2018-02-04, 11:52
dataset
posted on 2018-07-10, 12:53 authored by Nathan Watson-Haigh, Radoslaw Suchecki, Melissa de Oliveira Santos Garcia, Elena Kalashyan, Ute BaumannWGS reads of Kukri (http://dx.doi.org/10.1111/j.1467-7652.2012.00717.x) were aligned against the IWGSC Triticum aestivum Chinese Spring RefSeq v1.0 genome assembly using Minimap2. These BAM files (.bam) and index files (.bam.bai) are provided together with a summary of read alignment coverage bigWig files (.bam.bw). SNP variants were called from these BAM files to generate VCF files (.bam.vcf.gz) and index files (.bam.vcf.gz.tbi) and are provided together with a summary of SNP density (SNPs per 10 kbp) bigWig files (.bam.vcf.w10000_s10000.bw). VCF files contain the following filter values and corresponding meaning: PASS = high quality (Q>=30) homozygous; Het = high quality (Q>=30) heterozygous; LowQualHom = low quality (Q<30) homozygous; LowQualHet = low quality (Q<30) heterozygous. Files are provided separately for each chromosome part.
