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DatasetA_alignment_partitions_fullexons25.txt (23.24 kB)
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DatasetA_concatenated_alignment_fullexons25.fasta (3.37 MB)
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DatasetB_concatenated_alignment_fullexons50.fasta (5.47 MB)
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DatasetC_concatenated_alignment_fullexons75.fasta (6.64 MB)
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DatasetB_alignment_partitions_fullexons50.txt (45.25 kB)
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DatasetC_alignment_partitions_fullexons75.txt (57.83 kB)
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PhD Thesis Chapter 2: Alignments and partition files
Danielle Stringer PhD thesis Chapter 2: Development and evaluation of a custom bait
design based on 469 single-copy protein-coding genes for exon capture of
isopods (Philosciidae: Haloniscus).
The files included here are the final three alignments (Datasets A–B) and the dataset exon partition files used in PartitionFinder. The three alignments (containing up to 25% (A), 50% (B), and 75% (C) missing sequences) include sequence data for 40 isopod samples and consist of 420, 807, and 1,026 exons, respectively.
