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.BW
RAC-875_chr6B_part2.bam.bw (195.48 MB)
.TBI
RAC-875_chr4A_part1.bam.vcf.gz.tbi (250.78 kB)
.BW
RAC-875_chr3D_part1.bam.vcf.w10000_s10000.bw (5.88 MB)
.TBI
RAC-875_chr3D_part1.bam.vcf.gz.tbi (253.21 kB)
.GZ
RAC-875_chr4A_part1.bam.vcf.gz (24.73 MB)
.GZ
RAC-875_chr3D_part1.bam.vcf.gz (10.3 MB)
.BW
RAC-875_chr6A_part2.bam.vcf.w10000_s10000.bw (5.82 MB)
.TBI
RAC-875_chr6A_part2.bam.vcf.gz.tbi (93.8 kB)
.GZ
RAC-875_chr6A_part2.bam.vcf.gz (13.74 MB)
.BAM
RAC-875_chrUn.bam (2.39 GB)
.BW
RAC-875_chr3A_part1.bam.vcf.w10000_s10000.bw (5.87 MB)
.TBI
RAC-875_chr3A_part1.bam.vcf.gz.tbi (243.9 kB)
.GZ
RAC-875_chr3A_part1.bam.vcf.gz (13.87 MB)
.BW
RAC-875_chr6A_part2.bam.bw (126.3 MB)
.BAI
RAC-875_chr6A_part2.bam.bai (477.99 kB)
.BAM
RAC-875_chr7D_part2.bam (2.19 GB)
.BW
RAC-875_chr4B_part1.bam.bw (512.2 MB)
.BW
RAC-875_chr4A_part1.bam.vcf.w10000_s10000.bw (5.88 MB)
.BAI
RAC-875_chr5B_part2.bam.bai (731.82 kB)
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RAC-875_chr5B_part2.bam.bw (182.23 MB)
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262 files

RAC-875 WGS vs IWGSC RefSeq v1.0 Genome Assembly

Version 2 2018-07-10, 12:53
Version 1 2018-02-04, 10:56
dataset
posted on 2018-07-10, 12:53 authored by Nathan Watson-Haigh, Radoslaw Suchecki, Melissa de Oliveira Santos Garcia, Elena Kalashyan, Ute Baumann
WGS reads of RAC-875 (http://dx.doi.org/10.1111/j.1467-7652.2012.00717.x) were aligned against the IWGSC Triticum aestivum Chinese Spring RefSeq v1.0 genome assembly using Minimap2. These BAM files (.bam) and index files (.bam.bai) are provided together with a summary of read alignment coverage bigWig files (.bam.bw). SNP variants were called from these BAM files to generate VCF files (.bam.vcf.gz) and index files (.bam.vcf.gz.tbi) and are provided together with a summary of SNP density (SNPs per 10 kbp) bigWig files (.bam.vcf.w10000_s10000.bw). VCF files contain the following filter values and corresponding meaning: PASS = high quality (Q>=30) homozygous; Het = high quality (Q>=30) heterozygous; LowQualHom = low quality (Q<30) homozygous; LowQualHet = low quality (Q<30) heterozygous. Files are provided separately for each chromosome part.

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