Simulated-Metagenome.xlsx (11.15 kB)

Simulated-Metagenome.xlsx

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posted on 25.10.2018 by Raphael Eisenhofer Philipona
List of microbial genomes used to construct the simulated metagenome used in an upcoming study. Simulated metagenomes were constructed using gargammel:

#empirical ancient DNA distribution:
./gargammel.pl --comp 1,0,0 -n 1500000 --loc 4 --scale 0.3 -briggs 0.03,0.25,0.01,0.5 MEGAN-MALT-benchmark-plus-Ecoli/ -o Euk-DB-Contam/

#100bp fragments:
./gargammel.pl --comp 1,0,0 -n 1500000 --l 100 -briggs 0.03,0.25,0.01,0.5 MEGAN-MALT-benchmark-plus-Ecoli/ -o Euk-DB-Contam/100bp

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