.BW

Volcani-DD-1_chr6B_part2.bam.bw (94.99 MB)

.GZ

Volcani-DD-1_chr5B_part2.bam.vcf.gz (24.03 MB)

.BAI

Volcani-DD-1_chr4A_part1.bam.bai (1.24 MB)

.BW

Volcani-DD-1_chr6A_part2.bam.bw (60.06 MB)

.BAI

Volcani-DD-1_chr6A_part2.bam.bai (456.15 kB)

.BW

Volcani-DD-1_chr5B_part2.bam.bw (91.41 MB)

.BAI

Volcani-DD-1_chr5B_part2.bam.bai (691.71 kB)

.BAM

Volcani-DD-1_chrUn.bam (1.11 GB)

.BAM

Volcani-DD-1_chr7D_part1.bam (2.7 GB)

.BW

Volcani-DD-1_chr5A_part2.bam.vcf.w10000_s10000.bw (5.84 MB)

.BAM

Volcani-DD-1_chr7D_part2.bam (1.09 GB)

.TBI

Volcani-DD-1_chr5A_part2.bam.vcf.gz.tbi (143.98 kB)

.BAM

Volcani-DD-1_chr7B_part2.bam (1.2 GB)

.GZ

Volcani-DD-1_chr5A_part2.bam.vcf.gz (19.09 MB)

.BW

Volcani-DD-1_chr3B_part1.bam.vcf.w10000_s10000.bw (5.89 MB)

.TBI

Volcani-DD-1_chr3B_part1.bam.vcf.gz.tbi (262.04 kB)

.BW

Volcani-DD-1_chr6D_part2.bam.vcf.w10000_s10000.bw (5.78 MB)

.BW

Volcani-DD-1_chr4A_part1.bam.bw (181.94 MB)

.GZ

Volcani-DD-1_chr6A_part2.bam.vcf.gz (11.49 MB)

.TBI

Volcani-DD-1_chr5B_part2.bam.vcf.gz.tbi (142.31 kB)

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260 files

Volcani-DD-1 WGS vs IWGSC RefSeq v1.0 Genome Assembly

Version 2 2018-07-10, 12:53

Version 1 2018-02-04, 10:57

dataset

posted on 2018-07-10, 12:53 authored by Nathan Watson-Haigh, Radoslaw Suchecki, Melissa de Oliveira Santos Garcia, Elena Kalashyan, Ute Baumann

WGS reads of Volcani-DD-1 (http://dx.doi.org/10.1111/j.1467-7652.2012.00717.x) were aligned against the IWGSC Triticum aestivum Chinese Spring RefSeq v1.0 genome assembly using Minimap2. These BAM files (.bam) and index files (.bam.bai) are provided together with a summary of read alignment coverage bigWig files (.bam.bw). SNP variants were called from these BAM files to generate VCF files (.bam.vcf.gz) and index files (.bam.vcf.gz.tbi) and are provided together with a summary of SNP density (SNPs per 10 kbp) bigWig files (.bam.vcf.w10000_s10000.bw). VCF files contain the following filter values and corresponding meaning: PASS = high quality (Q>=30) homozygous; Het = high quality (Q>=30) heterozygous; LowQualHom = low quality (Q<30) homozygous; LowQualHet = low quality (Q<30) heterozygous. Files are provided separately for each chromosome part.