.GZ

Westonia_chr4B_part1.bam.vcf.gz (16.38 MB)

.GZ

Westonia_chr3D_part1.bam.vcf.gz (15.48 MB)

.BW

Westonia_chr5B_part2.bam.vcf.w10000_s10000.bw (5.84 MB)

.TBI

Westonia_chr5B_part2.bam.vcf.gz.tbi (146.55 kB)

.BW

Westonia_chr4A_part1.bam.bw (232.71 MB)

.GZ

Westonia_chr5B_part2.bam.vcf.gz (26.01 MB)

.BAI

Westonia_chr4A_part1.bam.bai (1.26 MB)

.BW

Westonia_chr5B_part2.bam.bw (116.95 MB)

.BAI

Westonia_chr5B_part2.bam.bai (717.23 kB)

.BW

Westonia_chr3D_part1.bam.bw (245.57 MB)

.BAI

Westonia_chr3D_part1.bam.bai (1.33 MB)

.BAM

Westonia_chrUn.bam (1.77 GB)

.BAM

Westonia_chr7D_part2.bam (1.57 GB)

.BW

Westonia_chr2D_part1.bam.vcf.w10000_s10000.bw (5.88 MB)

.TBI

Westonia_chr2D_part1.bam.vcf.gz.tbi (250.41 kB)

.BAM

Westonia_chr7D_part1.bam (3.89 GB)

.BW

Westonia_chr3A_part1.bam.vcf.w10000_s10000.bw (5.88 MB)

.TBI

Westonia_chr3D_part1.bam.vcf.gz.tbi (256.87 kB)

.BW

Westonia_chr3D_part1.bam.vcf.w10000_s10000.bw (5.88 MB)

.BAI

Westonia_chr6A_part2.bam.bai (466.41 kB)

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264 files

Westonia WGS vs IWGSC RefSeq v1.0 Genome Assembly

Version 2 2018-07-10, 12:52

Version 1 2018-02-04, 11:50

dataset

posted on 2018-07-10, 12:52 authored by Nathan Watson-Haigh, Radoslaw Suchecki, Melissa de Oliveira Santos Garcia, Elena Kalashyan, Ute Baumann

WGS reads of Westonia (http://dx.doi.org/10.1111/j.1467-7652.2012.00717.x) were aligned against the IWGSC Triticum aestivum Chinese Spring RefSeq v1.0 genome assembly using Minimap2. These BAM files (.bam) and index files (.bam.bai) are provided together with a summary of read alignment coverage bigWig files (.bam.bw). SNP variants were called from these BAM files to generate VCF files (.bam.vcf.gz) and index files (.bam.vcf.gz.tbi) and are provided together with a summary of SNP density (SNPs per 10 kbp) bigWig files (.bam.vcf.w10000_s10000.bw). VCF files contain the following filter values and corresponding meaning: PASS = high quality (Q>=30) homozygous; Het = high quality (Q>=30) heterozygous; LowQualHom = low quality (Q<30) homozygous; LowQualHet = low quality (Q<30) heterozygous. Files are provided separately for each chromosome part.