.BW

Wyalkatchem_chr4D_part1.bam.vcf.w10000_s10000.bw (5.87 MB)

.BAI

Wyalkatchem_chr6A_part2.bam.bai (470.48 kB)

.BW

Wyalkatchem_chr5A_part2.bam.vcf.w10000_s10000.bw (5.84 MB)

.TBI

Wyalkatchem_chr5A_part2.bam.vcf.gz.tbi (139.92 kB)

.GZ

Wyalkatchem_chr5A_part2.bam.vcf.gz (16.8 MB)

.BW

Wyalkatchem_chr4A_part1.bam.bw (349.56 MB)

.BAI

Wyalkatchem_chr4A_part1.bam.bai (1.27 MB)

.BAM

Wyalkatchem_chrUn.bam (2.59 GB)

.BW

Wyalkatchem_chr3D_part1.bam.bw (365.78 MB)

.BAI

Wyalkatchem_chr3D_part1.bam.bai (1.34 MB)

.BW

Wyalkatchem_chr5B_part2.bam.vcf.w10000_s10000.bw (5.84 MB)

.TBI

Wyalkatchem_chr5B_part2.bam.vcf.gz.tbi (145.06 kB)

.GZ

Wyalkatchem_chr5B_part2.bam.vcf.gz (30.22 MB)

.BW

Wyalkatchem_chr5A_part2.bam.bw (184.55 MB)

.BAI

Wyalkatchem_chr5A_part2.bam.bai (728.87 kB)

.BW

Wyalkatchem_chr5B_part2.bam.bw (157.92 MB)

.BAI

Wyalkatchem_chr5B_part2.bam.bai (706.58 kB)

.BW

Wyalkatchem_chr6A_part2.bam.bw (118.79 MB)

.GZ

Wyalkatchem_chr6A_part2.bam.vcf.gz (13 MB)

.TBI

Wyalkatchem_chr6A_part2.bam.vcf.gz.tbi (92.92 kB)

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261 files

Wyalkatchem WGS vs IWGSC RefSeq v1.0 Genome Assembly

Version 2 2018-07-10, 12:52

Version 1 2018-02-04, 10:57

dataset

posted on 2018-07-10, 12:52 authored by Nathan Watson-Haigh, Radoslaw Suchecki, Melissa de Oliveira Santos Garcia, Elena Kalashyan, Ute Baumann

WGS reads of Wyalkatchem (http://dx.doi.org/10.1111/j.1467-7652.2012.00717.x) were aligned against the IWGSC Triticum aestivum Chinese Spring RefSeq v1.0 genome assembly using Minimap2. These BAM files (.bam) and index files (.bam.bai) are provided together with a summary of read alignment coverage bigWig files (.bam.bw). SNP variants were called from these BAM files to generate VCF files (.bam.vcf.gz) and index files (.bam.vcf.gz.tbi) and are provided together with a summary of SNP density (SNPs per 10 kbp) bigWig files (.bam.vcf.w10000_s10000.bw). VCF files contain the following filter values and corresponding meaning: PASS = high quality (Q>=30) homozygous; Het = high quality (Q>=30) heterozygous; LowQualHom = low quality (Q<30) homozygous; LowQualHet = low quality (Q<30) heterozygous. Files are provided separately for each chromosome part.