.BAI

Xiaoyan-54_chr4B_part1.bam.bai (1.23 MB)

.BAM

Xiaoyan-54_chrUn.bam (1.48 GB)

.BAM

Xiaoyan-54_chr7D_part1.bam (3.13 GB)

.BAM

Xiaoyan-54_chr7D_part2.bam (1.26 GB)

.BW

Xiaoyan-54_chr3B_part1.bam.vcf.w10000_s10000.bw (5.89 MB)

.BW

Xiaoyan-54_chr5B_part2.bam.vcf.w10000_s10000.bw (5.84 MB)

.TBI

Xiaoyan-54_chr3B_part1.bam.vcf.gz.tbi (262.62 kB)

.TBI

Xiaoyan-54_chr5B_part2.bam.vcf.gz.tbi (142.49 kB)

.BW

Xiaoyan-54_chr3A_part1.bam.vcf.w10000_s10000.bw (5.89 MB)

.BW

Xiaoyan-54_chr6A_part2.bam.bw (69.7 MB)

.BW

Xiaoyan-54_chr5A_part2.bam.bw (99.71 MB)

.TBI

Xiaoyan-54_chr3A_part1.bam.vcf.gz.tbi (252.76 kB)

.BAI

Xiaoyan-54_chr6A_part2.bam.bai (457.78 kB)

.GZ

Xiaoyan-54_chr5B_part2.bam.vcf.gz (27.22 MB)

.BAI

Xiaoyan-54_chr5A_part2.bam.bai (693.69 kB)

.GZ

Xiaoyan-54_chr3A_part1.bam.vcf.gz (31.23 MB)

.GZ

Xiaoyan-54_chr3B_part1.bam.vcf.gz (63.13 MB)

.GZ

Xiaoyan-54_chr6A_part2.bam.vcf.gz (11.56 MB)

.TBI

Xiaoyan-54_chr6A_part2.bam.vcf.gz.tbi (92.71 kB)

.GZ

Xiaoyan-54_chr5A_part2.bam.vcf.gz (23.33 MB)

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262 files

Xiaoyan-54 WGS vs IWGSC RefSeq v1.0 Genome Assembly

Version 2 2018-07-10, 12:55

Version 1 2018-02-04, 10:51

dataset

posted on 2018-07-10, 12:55 authored by Nathan Watson-Haigh, Radoslaw Suchecki, Melissa de Oliveira Santos Garcia, Elena Kalashyan, Ute Baumann

WGS reads of Xiaoyan-54 (http://dx.doi.org/10.1111/j.1467-7652.2012.00717.x) were aligned against the IWGSC Triticum aestivum Chinese Spring RefSeq v1.0 genome assembly using Minimap2. These BAM files (.bam) and index files (.bam.bai) are provided together with a summary of read alignment coverage bigWig files (.bam.bw). SNP variants were called from these BAM files to generate VCF files (.bam.vcf.gz) and index files (.bam.vcf.gz.tbi) and are provided together with a summary of SNP density (SNPs per 10 kbp) bigWig files (.bam.vcf.w10000_s10000.bw). VCF files contain the following filter values and corresponding meaning: PASS = high quality (Q>=30) homozygous; Het = high quality (Q>=30) heterozygous; LowQualHom = low quality (Q<30) homozygous; LowQualHet = low quality (Q<30) heterozygous. Files are provided separately for each chromosome part.