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softwareposted on 18.10.2018 by Soon Wei Wong
Code as a research output can either be uploaded directly from your computer or through the code management system GitHub. Versioning of code repositories is supported.
hubCheck - Check a track data hub for integrity.
-checkSettings - check trackDb settings to spec
-version=[v?|url] - version to validate settings against
(defaults to version in hub.txt, or current standard)
-extra=[file|url] - accept settings in this file (or url)
-level=base|required - reject settings below this support level
-settings - just list settings with support level
Will create this directory if not existing
-noTracks - don't check remote files for tracks, just trackDb (faster)
-udcDir=/dir/to/cache - place to put cache for remote bigBeds and bigWigs