Settings used

alignment         : ./Esibiricum_dataset_050716.phy
branchlengths     : linked
models            : GTR+G
model_selection   : bic
search            : greedy


Best partitioning scheme

Scheme Name       : step_27
Scheme lnL        : -31769.79393
Scheme BIC        : 64156.6544266
Number of params  : 66
Number of sites   : 11493
Number of subsets : 5

Subset | Best Model | Subset Partitions              | Subset Sites                   | Alignment                               
1      | GTR+G      | ATP6_1, CYTB_1, ND1_1, ND2_1, ND3_1, ND4L_1, ND4_1, ND5_1, ND6_2 | 1-318, 319-665, 1462-1687, 1949-2063, 2064-2160, 2161-2619, 2620-3218, 3219-3597, 7365-7534 | ./analysis/phylofiles/55f9edad2d53e84bbdd7234690a25785.phy
2      | GTR+G      | 12S_stems, 16S_stems, CO1_1, CO2_1, CO3_1, tRNA_stems | 666-1179, 1180-1407, 1688-1948, 7963-8470, 9187-10012, 10634-11493 | ./analysis/phylofiles/f9e4d9091462e5170f8d560407660784.phy
3      | GTR+G      | 12S_loops, 16S_loops, ATP8_1, ATP8_2, ND6_1, tRNA_loops | 1408-1461, 5005-5058, 7195-7364, 7535-7962, 8471-9186, 10013-10633 | ./analysis/phylofiles/7d110bf526111059168256a32a248932.phy
4      | GTR+G      | ATP6_2, CYTB_2, ND1_2, ND2_2, ND3_2, ND4L_2, ND4_2, ND5_2 | 3598-3915, 3916-4262, 5059-5284, 5546-5660, 5661-5757, 5758-6216, 6217-6815, 6816-7194 | ./analysis/phylofiles/2e42837abd144309b1b5295249db53dc.phy
5      | GTR+G      | CO1_2, CO2_2, CO3_2            | 4263-4776, 4777-5004, 5285-5545 | ./analysis/phylofiles/31187fe514fe0d28d5912c4a308e7e8a.phy


Scheme Description in PartitionFinder format
Scheme_step_27 = (ATP6_1, CYTB_1, ND1_1, ND2_1, ND3_1, ND4L_1, ND4_1, ND5_1, ND6_2) (12S_stems, 16S_stems, CO1_1, CO2_1, CO3_1, tRNA_stems) (12S_loops, 16S_loops, ATP8_1, ATP8_2, ND6_1, tRNA_loops) (ATP6_2, CYTB_2, ND1_2, ND2_2, ND3_2, ND4L_2, ND4_2, ND5_2) (CO1_2, CO2_2, CO3_2);

RaxML-style partition definitions
DNA, p1 = 1-318, 319-665, 1462-1687, 1949-2063, 2064-2160, 2161-2619, 2620-3218, 3219-3597, 7365-7534
DNA, p2 = 666-1179, 1180-1407, 1688-1948, 7963-8470, 9187-10012, 10634-11493
DNA, p3 = 1408-1461, 5005-5058, 7195-7364, 7535-7962, 8471-9186, 10013-10633
DNA, p4 = 3598-3915, 3916-4262, 5059-5284, 5546-5660, 5661-5757, 5758-6216, 6217-6815, 6816-7194
DNA, p5 = 4263-4776, 4777-5004, 5285-5545